What is Star aligner?

STAR Aligner STAR is an aligner designed to specifically address many of the challenges of RNA-seq data mapping using a strategy to account for spliced alignments.

What is TopHat Rnaseq?

TopHat is a fast splice junction mapper for RNA-Seq reads. It aligns RNA-Seq reads to mammalian-sized genomes using the ultra high-throughput short read aligner Bowtie, and then analyzes the mapping results to identify splice junctions between exons.

What is Cuffdiff?

Cuffdiff estimates the number of fragments that originated from each transcript, primary transcript, and gene in each sample. Primary transcript and gene counts are computed by summing the counts of transcripts in each primary transcript group or gene group.

Is TopHat monitored?

Yes. Pre-existing Top Hat Tests can be administered as remotely monitored by adjusting the test’s Settings.

What is Star bioinformatics?

A tool to align RNA-seq data. The STAR algorithm uses suffix arrays, seed clustering, and stitching. It can detect non-canonical splice sites, chimeric sequences, and can also map full-length RNA sequences.

What is a star index?

A star index is a collection of join indices, one for every foreign key join in a star or snowflake schema.

What is Cuffdiff RNA-Seq?

Cuffdiff quantifies this transcriptome across multiple conditions using the TopHat read alignments. CummeRbund helps users rapidly explore and visualize the gene expression data produced by Cuffdiff, including differentially expressed genes and transcripts.

What is cufflinks bioinformatics?

Cufflinks consist of a suite of tools for differential gene expression analysis of RNA-seq data. It assembles aligned reads in a set of transcripts and estimates the relative abundances. The Cufflinks suite consists of the following tools: cufflinks, cuffcompare, cuffmerge, cuffquant, cuffdiff, and cuffnorm.

Can Top Hat access your camera?

Access to the computer’s webcam has been enabled Students will see a pop-up in their browser prompting them to allow webcam access. Note: students will not see this prompt if the webcam requirement has been disabled (see the Creating a Remotely Monitored Test section above).

Can you cheat on Top Hat?

Top Hat Test combats the problem. It allows professors in traditional classroom environments to create digital tests that students can take on their own devices. These tests monitor student behavior, locking them out if they stray from the test, thus reducing the risk of cheating.